Function reference
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CompareSample() - Perform simulation and compare different ways of sampling the data to fill
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CompareSim() - Perform simulation and compare them to original species
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CompareTaxo() - Compare the original taxonomic information of a dataset with predicted one
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CreateAlpha() - Create matrix of posterior alpha
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DirichCat() - Draw a full species name using a Categorical-Dirichlet scheme
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DrawBota() - Gives a botanical name to a tree with a vernacular name
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DrawDeterm() - Attribute the most likely full species name
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Get1Sim() - Simulate a fully determined dataset
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Paracou6_2016 - Paracou6_2016
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PrepData() - Data preparation
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PrepPrior() - Prior preparation
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PriorAllFG_20220126 - PriorAllFG_20220126
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PriorParacouNew_20220126 - PriorParacouNew_20220126
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PriorParacouOld_20220126 - PriorParacouOld_20220126
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SampleTestDataset() - Split data between training and test
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SimFullCom() - Simulates Nsim fully determined communities
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ValidTaxo() - Store results of simulation in CompareSim
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VernaBotaSims-classVernaBotaSims - VernaBotaSims class and associated methods
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autoplot(<VernaBotaSims>) - plot the accuracy of scenarios
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plot(<VernaBotaSims>) - plot the accuracy of scenarios
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stabletest() - test the stability of the results of CompareSim
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summary(<VernaBotaSims>) - summary of scenarios