VernaBotaSims class and associated methods

The VernaBotaSims class is the output of the CompareSim function.

Plot function to be applied on VernaBotaSims objects. This function draw a boxplot of the percentages of well associated species for each scenario.

Summary function to be applied on VernaBotaSims objects. This function print the results of each scenario, together with its parameters.

Slots

NScenar

numeric: number of scenarios simulated

ParamScenar

data.frame: a datatable with the parameters for each scenario (input of CompareSim)

D2fill

dataset to fill (input of CompareSim)

DAsso

list of datasets of observation used for each scenario (input of CompareSim)

priors

list of datasets containing the priors for each scenario (input of CompareSim)

pc2fill

percentage of data to fill (input of CompareSim)

pcFamilyDet

percentage of data determined at the family level (from the subset of dataFill to fill, input of CompareSim)

pcGenusDet

percentage of data determined at the genus level (from the subset of dataFill to fill, the rest isn't determined at all, input of CompareSim)

NbSim

number of simulations (input of CompareSim)

pc_results

list of double corresponding to the percentage of well simulated species

results

list of results from SimFullCom for each scenario.